Science and academic research
Resources for scientific and academic work.
They cover paper search such as PubMed and arXiv, bioinformatics, chemistry, physics and math, earth and climate data, and scientific writing.
Listings are what publishers declare in their ARD catalogs and the registries StealthStack reads. The category and summaries are our reading of each listing. Each listing links to its own page with the publisher's endpoint.
- SKILLbioservices Skill for querying 40+ bioinformatics services like UniProt and KEGG from Python.
- SKILLpysam Skill for reading and writing genomic files (BAM, VCF, FASTQ) with pysam.
- SKILLscanpy Skill for single-cell RNA-seq analysis pipelines with Scanpy.
- SKILLpaper-lookup Skill that searches 11 academic literature APIs for papers and citations.
- SKILLscientific-writing Skill for drafting and auditing scientific manuscripts with evidence provenance.
- SKILLpathway-enrichment Skill for pathway and gene-set enrichment analysis on gene lists.
- SKILLsympy Skill for exact symbolic math in Python with SymPy.
- SKILLanndata Skill for AnnData annotated matrices and .h5ad files in single-cell analysis.
- SKILLmsa-structure-prediction-pipeline Skill running protein structure prediction via NVIDIA BioNeMo NIMs (MSA + OpenFold3).
- SKILLpaperclip Skill to search biomedical papers, regulatory docs, trial registries and UniProt/PDB.
- SKILLmolfeat Skill for molecular featurization with Molfeat for QSAR and ML.
- SKILLopenfold2-nim Skill for OpenFold2 BioNeMo NIM monomer protein structure prediction.
- SKILLdeepchem Skill for molecular machine learning with DeepChem featurizers and datasets.
- SKILLvenue-templates Skill for venue-specific formatting of manuscripts, posters and grants in LaTeX.
- SKILLnvmolkit-usage Skill for writing nvMolKit code for GPU-accelerated RDKit cheminformatics.
- SKILLtamarind Skill for using Tamarind Bio molecular design tools via REST API or MCP.
- SKILLdatamol Skill for Datamol, a Pythonic wrapper around RDKit for molecule handling.
- SKILLnextflow-development Skill running nf-core bioinformatics pipelines on sequencing data.
- APIveda.ng Research Paper Search API Research paper search API over 233,000+ AI and Web3 papers from OpenAlex.
- SKILLscvi-tools Skill for single-cell analysis with scvi-tools models.
- API2s.io Bio Gene, protein (UniProt) and species (GBIF) lookups; pay per call via x402 USDC.
- API2s.io Research Researcher, grant and research-org lookups (ORCID, NIH, ROR); x402 USDC.
- API2s.io Space 11 space endpoints: asteroids, exoplanets, launches, satellites; x402 USDC.
- API2s.io Chem Chemical compound lookup by CID, name, SMILES or InChIKey; x402 USDC per call.
- API2s.io Soil USDA soil profiles and plant hardiness zones; pay per call via x402 USDC.
- API2s.io Papers Scholarly literature search and citation graphs; pay per call via x402 USDC.
- SKILLpeer-review Skill for drafting evidence-bounded peer reviews and manuscript assessments.
- API2s.io Paper Resolves a DOI to bibliographic metadata via Crossref; x402 USDC per call.
- SKILLearth2studio-create-datasource Skill for creating Earth2Studio data source wrappers from remote stores.
- SKILLpyzotero Skill for working with Zotero reference libraries via pyzotero.
- SKILLinstrument-data-to-allotrope Skill that converts lab instrument output to Allotrope Simple Model JSON or CSV.
- SKILLearth2studio-data-fetch Skill for fetching weather and climate data via Earth2Studio data sources.
- SKILLearth2studio-deterministic-forecast Skill for building deterministic weather forecast scripts with Earth2Studio.
- SKILLearth2studio-create-diagnostic Skill for creating Earth2Studio diagnostic model wrappers.
- SKILLearth2studio-create-prognostic Skill for creating Earth2Studio prognostic forecast model wrappers.
- SKILLphysicsnemo-discover Skill navigating PhysicsNeMo models and examples for SciML tasks.
- SKILLpptx-posters Skill for creating editable scientific posters in PowerPoint.
- SKILLcuopt-numerical-optimization-api-python Skill for solving LP, MILP and QP with the cuOpt Python API.
- SKILLcuopt-numerical-optimization-api-cli Skill for solving LP, MILP and QP from MPS files with the cuOpt CLI.